A B C D E F G H I J K L M N O P Q R S T U V W X Y

J

JAR_ARG - Static variable in class biolockj.Constants

Java runtime arg used to pass application jar path: "-jar"

JAVA_PARAMS - Static variable in class biolockj.module.classifier.r16s.RdpClassifier

Config List property: "rdp.javaParams" The parameters for the call to java when running rdp.

JavaLaunchProcess - Class in biolockj.launch

JavaLaunchProcess(String[]) - Constructor for class biolockj.launch.JavaLaunchProcess

JavaLaunchProcess.InterruptTimerTask - Class in biolockj.launch

JavaModule - Interface in biolockj.module

Classes that implement this interface are pure Java modules.

JavaModuleImpl - Class in biolockj.module

Superclass for Java BioModules that will be called in separate instances of the application.

JavaModuleImpl() - Constructor for class biolockj.module.JavaModuleImpl

join(Collection<?>) - Static method in class biolockj.util.BioLockJUtil

Merge the collection into a String with 1 space between each element.toString() value.

JsonNode - Class in biolockj.node

Each JsonNode holds an OTU, count, and link to its parent node.

JsonNode(String, Long, JsonNode, String) - Constructor for class biolockj.node.JsonNode

JsonNode Constructor

JsonReport - Class in biolockj.module.report

This BioModule is used to build a JSON file (summary.json) compiled from all OTUs in the dataset.

JsonReport() - Constructor for class biolockj.module.report.JsonReport

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