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J

JAR_ARG - Static variable in class biolockj.Constants
Java runtime arg used to pass application jar path: "-jar"
JAVA_PARAMS - Static variable in class biolockj.module.classifier.r16s.RdpClassifier
Config List property: "rdp.javaParams" The parameters for the call to java when running rdp.
JavaLaunchProcess - Class in biolockj.launch
 
JavaLaunchProcess(String[]) - Constructor for class biolockj.launch.JavaLaunchProcess
 
JavaLaunchProcess.InterruptTimerTask - Class in biolockj.launch
 
JavaModule - Interface in biolockj.module
Classes that implement this interface are pure Java modules.
JavaModuleImpl - Class in biolockj.module
Superclass for Java BioModules that will be called in separate instances of the application.
JavaModuleImpl() - Constructor for class biolockj.module.JavaModuleImpl
 
join(Collection<?>) - Static method in class biolockj.util.BioLockJUtil
Merge the collection into a String with 1 space between each element.toString() value.
JsonNode - Class in biolockj.node
Each JsonNode holds an OTU, count, and link to its parent node.
JsonNode(String, Long, JsonNode, String) - Constructor for class biolockj.node.JsonNode
JsonNode Constructor
JsonReport - Class in biolockj.module.report
This BioModule is used to build a JSON file (summary.json) compiled from all OTUs in the dataset.
JsonReport() - Constructor for class biolockj.module.report.JsonReport
 
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