Interface | Description |
---|---|
BioModule | |
DatabaseModule |
Interface for BioModules that use a reference database that is used by the DockerUtil to find the correct database
directory to map to the container /db volume.
|
JavaModule |
Classes that implement this interface are pure Java modules.
|
OutsidePipelineWriter |
Implementing modules get to have write permissions outside of the pipeline.
|
ReadCounter |
Identifies modules that can report the number of reads per file in the metadata.
|
ScriptModule |
Classes that implement this interface are
|
SeqModule |
Classes that implement this interface requires sequence files for input.
|
Class | Description |
---|---|
BioModuleImpl |
Superclass for standard BioModules (classifiers, parsers, etc).
|
JavaModuleImpl |
Superclass for Java BioModules that will be called in separate instances of the application.
|
ScriptModuleImpl |
Superclass for Java BioModules that will be called in separate instances of the application.
|
SeqModuleImpl |
Superclass for SeqModules that take sequence files as input for pre-processing prior to classification.
|
Stop |
Stop a pipeline.
|