biolockj.launch

Class JavaLaunchProcess

java.lang.Object

biolockj.launch.LaunchProcess

biolockj.launch.JavaLaunchProcess

public class JavaLaunchProcess
extends LaunchProcess

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	JavaLaunchProcess.InterruptTimerTask

Field Summary

Fields

Modifier and Type	Field and Description
(package private) static String	BioLockJ_CLASS

Fields inherited from class biolockj.launch.LaunchProcess

AWS_ARG, BIOLOCKJ_TEST_MODE, BIOLOCKJ_TEST_MODE_VALUE, BLJ_ARG, BLJ_DIR, BLJ_PROJ_DIR, command, CONFIG_ARG, DEBUG_ARG, DOCKER_ARG, DOCKER_MAPPER_ARG, ENV_ARG, envVars, EXT_MODS_ARG, FG_ARG, GUI_ARG, initDir, mostRecent, msgs, parameters, PASSWORD_ARG, PLS_USE_INSTALL, PRECHECK_ARG, PROJ_ARG, RESTART_ARG, UNUSED_PROPS_ARG, WAIT_ARG

Constructor Summary

Constructors

Constructor and Description
JavaLaunchProcess(String[] args)

Method Summary

Modifier and Type	Method and Description
(package private) String	createCmd()
static void	main(String[] args)
(package private) void	runCommand()

Methods inherited from class biolockj.launch.LaunchProcess

assignMainArg, catchFirstResponse, checkBasicArgCompatibility, displayArgVals, foundNewPipeline, gatherEnvVars, getConfigFile, getFlag, getMainArgVal, getMostRecentPipeline, getParameter, getPipedir, getRestartDir, grabPipelineLocation, inTestMode, isReplacementForPrecheck, printActionOptions, printHelp, printHelp, printInfo, printPipeDir, printPipelineStatus, printVersion, restartDirHasStatusFlag, scanForKeys, setPipedir, showArgs, watchProcess

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

BioLockJ_CLASS

static final String BioLockJ_CLASS

See Also:

Constant Field Values

Constructor Detail

JavaLaunchProcess

public JavaLaunchProcess(String[] args)
                  throws DockerVolCreationException,
                         EndLaunch,
                         ConfigPathException

Throws:

DockerVolCreationException

EndLaunch

ConfigPathException

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception

createCmd

String createCmd()
          throws EndLaunch

Overrides:

createCmd in class LaunchProcess

Throws:

EndLaunch

runCommand

void runCommand()
         throws Exception

Overrides:

runCommand in class LaunchProcess

Throws:

Exception