public interface JavaModule extends ScriptModule
LOG_DIR, MAIN_SCRIPT_PREFIX, NO_VERSION, OUTPUT_DIR, RES_DIR, TEMP_DIR
Modifier and Type | Method and Description |
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void |
moduleComplete()
This method will create the success flag file so the next module can run.
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void |
moduleFailed()
This method will create the fail flag file so the pipeline can move on..
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void |
runModule()
This method executes the modules primary Java routine.
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buildScript, buildScriptForPairedReads, getJobParams, getMainScript, getScriptDir, getScriptErrors, getTimeout, getWorkerScriptFunctions
checkDependencies, cleanUp, executeTask, getAlias, getDockerImageName, getDockerImageOwner, getDockerImageTag, getID, getInputFiles, getLogDir, getMetadata, getModuleDir, getOutputDir, getPostRequisiteModules, getPreRequisiteModules, getPropDefault, getResourceDir, getSummary, getTempDir, init, isValidInputModule, setAlias, version
void moduleComplete() throws Exception
Exception
- thrown if any runtime error occursvoid moduleFailed() throws Exception
Exception
- thrown if any runtime error occurs