biolockj.module

Interface ReadCounter

All Superinterfaces:

BioModule

All Known Implementing Classes:

PearMergeReads, RegisterNumReads, SeqFileValidator, TrimPrimers

public interface ReadCounter
extends BioModule

Identifies modules that can report the number of reads per file in the metadata. Might be conditioned on Constants.REPORT_NUM_READS

Author:

ieclabau

Field Summary

Fields inherited from interface biolockj.module.BioModule

LOG_DIR, MAIN_SCRIPT_PREFIX, NO_VERSION, OUTPUT_DIR, RES_DIR, TEMP_DIR

Method Summary

Methods inherited from interface biolockj.module.BioModule

checkDependencies, cleanUp, executeTask, getAlias, getDockerImageName, getDockerImageOwner, getDockerImageTag, getID, getInputFiles, getLogDir, getMetadata, getModuleDir, getOutputDir, getPostRequisiteModules, getPreRequisiteModules, getPropDefault, getResourceDir, getSummary, getTempDir, init, isValidInputModule, setAlias, version