biolockj.module

Interface OutsidePipelineWriter

All Superinterfaces:

BioModule

All Known Implementing Classes:

SraDownload, SraMetaDB

public interface OutsidePipelineWriter
extends BioModule

Implementing modules get to have write permissions outside of the pipeline.

Author:

ieclabau

Field Summary

Fields inherited from interface biolockj.module.BioModule

LOG_DIR, MAIN_SCRIPT_PREFIX, NO_VERSION, OUTPUT_DIR, RES_DIR, TEMP_DIR

Method Summary

Modifier and Type	Method and Description
Set<String>	getWriteDirs()

Methods inherited from interface biolockj.module.BioModule

checkDependencies, cleanUp, executeTask, getAlias, getDockerImageName, getDockerImageOwner, getDockerImageTag, getID, getInputFiles, getLogDir, getMetadata, getModuleDir, getOutputDir, getPostRequisiteModules, getPreRequisiteModules, getPropDefault, getResourceDir, getSummary, getTempDir, init, isValidInputModule, setAlias, version

Method Detail

getWriteDirs

Set<String> getWriteDirs()
                  throws DockerVolCreationException,
                         ConfigPathException

Throws:

DockerVolCreationException

ConfigPathException