Package | Description |
---|---|
biolockj.module.implicit |
The modules in this package are implicitly added to pipelines as needed.
These modules cannot be directly added to any pipeline unless overridden via pipeline.disableImplicitModules=Y. |
biolockj.module.seq |
BioModule s used to prepare sequence files or update the metadata prior to classification. |
Modifier and Type | Class and Description |
---|---|
class |
RegisterNumReads
This BioModule parses sequence file to count the number of reads per sample.
|
Modifier and Type | Class and Description |
---|---|
class |
PearMergeReads
This BioModule will merge forward and reverse fastq files using PEAR.
For more informations, see the online PEAR manual: https://sco.h-its.org/exelixis/web/software/pear/doc.html |
class |
SeqFileValidator
This BioModule validates fasta/fastq file formats are valid and enforces min/max read lengths.
|
class |
TrimPrimers
This BioModule removes sequence primers from demultiplexed files.
The primers are defined using regular expressions in a separate file. |