Uses of Interface
biolockj.module.ReadCounter

Packages that use ReadCounter

Package	Description
biolockj.module.implicit	The modules in this package are implicitly added to pipelines as needed. These modules cannot be directly added to any pipeline unless overridden via pipeline.disableImplicitModules=Y.
biolockj.module.seq	BioModules used to prepare sequence files or update the metadata prior to classification.

Uses of ReadCounter in biolockj.module.implicit

Classes in biolockj.module.implicit that implement ReadCounter

Modifier and Type	Class and Description
class	RegisterNumReads This BioModule parses sequence file to count the number of reads per sample.

Uses of ReadCounter in biolockj.module.seq

Classes in biolockj.module.seq that implement ReadCounter

Modifier and Type	Class and Description
class	PearMergeReads This BioModule will merge forward and reverse fastq files using PEAR. For more informations, see the online PEAR manual: https://sco.h-its.org/exelixis/web/software/pear/doc.html
class	SeqFileValidator This BioModule validates fasta/fastq file formats are valid and enforces min/max read lengths.
class	TrimPrimers This BioModule removes sequence primers from demultiplexed files. The primers are defined using regular expressions in a separate file.