Uses of Class
biolockj.node.ParsedSample

Packages that use ParsedSample

Package	Description
biolockj.module.implicit.parser	This package contains Parser BioModules in the r16s and WGS sub-packages that are paired with a ClassifierModule via BioModule.getPostRequisiteModules() to run immediately after the classifier.
biolockj.node	Package biolockj.node contains core classes instantiated by the ParserModule to hold Sample ID-(OTU name/count) data read in from ClassifierModule output.

Uses of ParsedSample in biolockj.module.implicit.parser

Methods in biolockj.module.implicit.parser that return ParsedSample

Modifier and Type	Method and Description
ParsedSample	ParserModuleImpl.getParsedSample(String sampleId)
ParsedSample	ParserModule.getParsedSample(String sampleId) After ParserModule.parseSamples() completes, this method can be called to get a ParsedSample by its sample ID.

Methods in biolockj.module.implicit.parser that return types with arguments of type ParsedSample

Modifier and Type	Method and Description
protected TreeSet<ParsedSample>	ParserModuleImpl.getParsedSamples() Simple getter for TreeSet of ParsedSamples

Methods in biolockj.module.implicit.parser with parameters of type ParsedSample

Modifier and Type	Method and Description
protected void	ParserModuleImpl.addParsedSample(ParsedSample parsedSample) Add ParsedSample to parser cache

Uses of ParsedSample in biolockj.node

Methods in biolockj.node with parameters of type ParsedSample

Modifier and Type	Method and Description
int	ParsedSample.compareTo(ParsedSample o)