Uses of Class
biolockj.node.JsonNode

Packages that use JsonNode

Package	Description
biolockj.module.report	This package contains BioModules that normalize OTU abundance tables output by Parser modules, merges them with the metadata, and generates various reports and notifications.
biolockj.node	Package biolockj.node contains core classes instantiated by the ParserModule to hold Sample ID-(OTU name/count) data read in from ClassifierModule output.

Uses of JsonNode in biolockj.module.report

Methods in biolockj.module.report that return types with arguments of type JsonNode

Modifier and Type	Method and Description
protected LinkedHashMap<String,TreeSet<JsonNode>>	JsonReport.buildJsonMap(JsonNode rootNode) Build JsonMap from the CompileOtuCounts output directory.
protected LinkedHashMap<String,TreeSet<JsonNode>>	JsonReport.updateNodeStats(LinkedHashMap<String,TreeSet<JsonNode>> jsonMap, File stats, String level, String label) Add stats from R_CalculateStats into all of the JsonNodes.

Methods in biolockj.module.report with parameters of type JsonNode

Modifier and Type	Method and Description
protected LinkedHashMap<String,TreeSet<JsonNode>>	JsonReport.buildJsonMap(JsonNode rootNode) Build JsonMap from the CompileOtuCounts output directory.
protected String	JsonReport.writeNodeAndChildren(JsonNode node, boolean hasPeer, LinkedHashMap<String,TreeSet<JsonNode>> jsonMap, int nodeLevel) Build lines of text output for the Json Report file.

Method parameters in biolockj.module.report with type arguments of type JsonNode

Modifier and Type	Method and Description
protected LinkedHashMap<String,TreeSet<JsonNode>>	JsonReport.updateNodeStats(LinkedHashMap<String,TreeSet<JsonNode>> jsonMap, File stats, String level, String label) Add stats from R_CalculateStats into all of the JsonNodes.
protected String	JsonReport.writeNodeAndChildren(JsonNode node, boolean hasPeer, LinkedHashMap<String,TreeSet<JsonNode>> jsonMap, int nodeLevel) Build lines of text output for the Json Report file.

Uses of JsonNode in biolockj.node

Methods in biolockj.node that return JsonNode

Modifier and Type	Method and Description
JsonNode	JsonNode.getParent() Getter method for parent

Methods in biolockj.node with parameters of type JsonNode

Modifier and Type	Method and Description
int	JsonNode.compareTo(JsonNode node)
void	JsonNode.setParent(JsonNode parent) Setter method for parent

Constructors in biolockj.node with parameters of type JsonNode

Constructor and Description
JsonNode(String taxa, Long count, JsonNode parent, String level) JsonNode Constructor