Package biolockj.module.classifier.wgs

This package contains Kraken, Kraken2, Humann2, MetaPhlAn classifier modules that assign taxonomy to WGS data.
As with all BioLockJ classifiers, these modules generate raw classifier output files from the sequence data.
Include the corresponding ParserModule in the Config file to generate standardized OTU abundance tables.

See: Description

Class Summary

Class	Description
Humann2Classifier	This BioModule runs biobakery humann2 program to generate the HMP Unified Metabolic Analysis Network HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads).
Kraken2Classifier	This BioModule assigns taxonomy to WGS sequences and translates the results into mpa-format.
KrakenClassifier	This BioModule assigns taxonomy to WGS sequences and translates the results into mpa-format.
Metaphlan2Classifier	This BioModule builds the bash scripts used to execute metaphlan2.py to classify WGS sequences with MetaPhlAn2.

Package biolockj.module.classifier.wgs Description

This package contains Kraken, Kraken2, Humann2, MetaPhlAn classifier modules that assign taxonomy to WGS data.
As with all BioLockJ classifiers, these modules generate raw classifier output files from the sequence data.
Include the corresponding ParserModule in the Config file to generate standardized OTU abundance tables.