Package biolockj.module.classifier.r16s

This package contains RDP and QIIME classifier modules that assign taxonomy to 16s sequences.
Output file formats are classifier specific so classifier requires a unique post-requisite ParserModule.

See: Description

Class Summary

Class	Description
QiimeClosedRefClassifier	This BioModule executes the QIIME script pick_closed_reference_otus.py on a FastA sequence files.
QiimeDeNovoClassifier	This module runs the QIIME pick_de_novo_otus.py script on FastA sequence files in a single script so it is important to allocate sufficient job resources if running in a clustered environment.
QiimeOpenRefClassifier	This module runs the QIIME pick_open_reference_otus.py script on FastA sequence files in a single script so it is important to allocate sufficient job resources if running in a clustered environment.
RdpClassifier	This BioModule uses RDP to assign taxonomy to 16s sequences.

Package biolockj.module.classifier.r16s Description

This package contains RDP and QIIME classifier modules that assign taxonomy to 16s sequences.
Output file formats are classifier specific so classifier requires a unique post-requisite ParserModule.