Uses of Class
biolockj.exception.OtuFileException

Packages that use OtuFileException

Package	Description
biolockj.util	Static utilities centralize and organize reusable core methods.

Uses of OtuFileException in biolockj.util

Methods in biolockj.util that throw OtuFileException

Modifier and Type	Method and Description
static TreeMap<String,Long>	OtuUtil.compileSampleOtuCounts(File file) Compile OTU counts from an individual sample OTU count file
static String	OtuUtil.getSampleId(File otuCountFile) Extract the sampleId from the OTU count file name. Input files should include a file name just before the .tsv file extension.

Constructors in biolockj.util that throw OtuFileException

Constructor and Description
OtuCountLine(String line) Each OTU count file line has 2 parts: OTU Name and OTU Count