Package | Description |
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biolockj.util |
Static utilities centralize and organize reusable core methods.
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Modifier and Type | Method and Description |
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static TreeMap<String,Long> |
OtuUtil.compileSampleOtuCounts(File file)
Compile OTU counts from an individual sample OTU count file
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static String |
OtuUtil.getSampleId(File otuCountFile)
Extract the sampleId from the OTU count file name.
Input files should include a file name just before the .tsv file extension. |
Constructor and Description |
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OtuCountLine(String line)
Each OTU count file line has 2 parts: OTU Name and OTU Count
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