biolockj.pipelines

Class OtherPipelineImpl

java.lang.Object

biolockj.pipelines.OtherPipelineImpl

All Implemented Interfaces:

OtherPipeline

public class OtherPipelineImpl
extends Object
implements OtherPipeline

The defaults here should be suitable for representing pipelines made by the current version of BioLockJ. Child classes with associated versions override these as needed. This represents pipelines that were not made by the current instance of BioLockJ, but that were made by the current (or near-current) version.

Author:

Ivory Blakley

Constructor Summary

Constructors

Constructor and Description
OtherPipelineImpl(File dir)

Method Summary

Modifier and Type	Method and Description
File	getMasterConfig() Get the MASTER_*.properties file for a given pipeline.
File	getPipeDir() Get the File object representing the top level of the pipeline folder.
String	getPipelineId()
File	getPipelineStatusFlag() The current status flag.
String	getProjectName()
boolean	isModuleDir(File dir)
boolean	isPrecheckPipeline() Determine if a given pipeline was run in precheck mode, ie using the parameter.
protected File	setMasterConfig() Used to initial set the masterProps file object.
protected String	setPipelineId()
protected String	setProjectName()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OtherPipelineImpl

public OtherPipelineImpl(File dir)
                  throws InvalidPipelineException

Throws:

InvalidPipelineException

Method Detail

getMasterConfig

public File getMasterConfig()

Description copied from interface: OtherPipeline

Get the MASTER_*.properties file for a given pipeline.

Specified by:

getMasterConfig in interface OtherPipeline

Returns:

the master config file for the pipeline

getPipeDir

public File getPipeDir()

Description copied from interface: OtherPipeline

Get the File object representing the top level of the pipeline folder.

Specified by:

getPipeDir in interface OtherPipeline

Returns:

getPipelineId

public String getPipelineId()

Specified by:

getPipelineId in interface OtherPipeline

getPipelineStatusFlag

public File getPipelineStatusFlag()

Description copied from interface: OtherPipeline

The current status flag. The value should not be stored as a field but determined each time the method is called.

Specified by:

getPipelineStatusFlag in interface OtherPipeline

getProjectName

public String getProjectName()

Specified by:

getProjectName in interface OtherPipeline

isModuleDir

public boolean isModuleDir(File dir)

Specified by:

isModuleDir in interface OtherPipeline

isPrecheckPipeline

public boolean isPrecheckPipeline()

Description copied from interface: OtherPipeline

Determine if a given pipeline was run in precheck mode, ie using the parameter.

Specified by:

isPrecheckPipeline in interface OtherPipeline

Returns:

setMasterConfig

protected File setMasterConfig()
                        throws InvalidPipelineException

Used to initial set the masterProps file object.

Returns:

Throws:

InvalidPipelineException

setProjectName

protected String setProjectName()

setPipelineId

protected String setPipelineId()