Package biolockj.module.report.r

This package contains BioModules that build pipeline reports from the standard OTU abundance tables by generating R scripts to produce the summary statistics and data visualizations output to PDF files.

See: Description

Class Summary

Class	Description
R_CalculateStats	This BioModule is used to build the R script used to generate taxonomy statistics and plots.
R_Module	This BioModule is the superclass for R script generating modules.
R_PlotEffectSize	This BioModule is used to run the R script used to generate OTU-metadata fold-change-barplots for each binary report field.
R_PlotMds	This BioModule is used to build the R script used to generate MDS plots for each report field and each taxonomy level configured.
R_PlotOtus	This BioModule is used to build the R script used to generate OTU-metadata box-plots and scatter-plots for each report field and taxonomy level.
R_PlotPvalHistograms	This BioModule is used to build the R script used to generate p-value histograms for each report field and each taxonomy level configured.

Package biolockj.module.report.r Description

This package contains BioModules that build pipeline reports from the standard OTU abundance tables by generating R scripts to produce the summary statistics and data visualizations output to PDF files.