Uses of Package
biolockj.module.implicit.parser

Packages that use biolockj.module.implicit.parser

Package	Description
biolockj.module.implicit.parser	This package contains Parser BioModules in the r16s and WGS sub-packages that are paired with a ClassifierModule via BioModule.getPostRequisiteModules() to run immediately after the classifier.
biolockj.module.implicit.parser.r16s	This package contains Parser BioModules that convert the 16S taxonomy reports generated by 16S classifiers (such as RDP and QIIME) into standardized OTU abundance tables.
biolockj.module.implicit.parser.wgs	This package contains Parser BioModules that convert the WGS taxonomy reports generated by WGS classifiers (such as Kraken, Kraken2 Metaphlan2, or Humann2) into standardized OTU abundance tables.

Classes in biolockj.module.implicit.parser used by biolockj.module.implicit.parser

Class and Description
ParserModule This interface defines the required methods to parse ClassifierModule output.

Classes in biolockj.module.implicit.parser used by biolockj.module.implicit.parser.r16s

Class and Description
ParserModule This interface defines the required methods to parse ClassifierModule output.
ParserModuleImpl Parser BioModules read ClassifierModule output to build standardized OTU count tables.

Classes in biolockj.module.implicit.parser used by biolockj.module.implicit.parser.wgs

Class and Description
ParserModule This interface defines the required methods to parse ClassifierModule output.
ParserModuleImpl Parser BioModules read ClassifierModule output to build standardized OTU count tables.