biolockj.launch

Class DockerLaunchProcess

java.lang.Object

biolockj.launch.LaunchProcess

biolockj.launch.DockerLaunchProcess

public class DockerLaunchProcess
extends LaunchProcess

Field Summary

Fields

Modifier and Type	Field and Description
static String	EXTERNAL_MODULES_CONTAINER_DIR
static int	GUI_PORT

Fields inherited from class biolockj.launch.LaunchProcess

AWS_ARG, BIOLOCKJ_TEST_MODE, BIOLOCKJ_TEST_MODE_VALUE, BLJ_ARG, BLJ_DIR, BLJ_PROJ_DIR, command, CONFIG_ARG, DEBUG_ARG, DOCKER_ARG, DOCKER_MAPPER_ARG, ENV_ARG, envVars, EXT_MODS_ARG, FG_ARG, GUI_ARG, initDir, mostRecent, msgs, parameters, PASSWORD_ARG, PLS_USE_INSTALL, PRECHECK_ARG, PROJ_ARG, RESTART_ARG, UNUSED_PROPS_ARG, WAIT_ARG

Constructor Summary

Constructors

Constructor and Description
DockerLaunchProcess(String[] args)

Method Summary

Modifier and Type	Method and Description
(package private) String	createCmd()
(package private) void	grabContainerId(String s)
(package private) void	grabPipelineLocation(String s)
static void	main(String[] args)
(package private) void	runCommand()
(package private) void	scanForKeys(String s) Scan string for specific keys which warrant specific actions.

Methods inherited from class biolockj.launch.LaunchProcess

assignMainArg, catchFirstResponse, checkBasicArgCompatibility, displayArgVals, foundNewPipeline, gatherEnvVars, getConfigFile, getFlag, getMainArgVal, getMostRecentPipeline, getParameter, getPipedir, getRestartDir, inTestMode, isReplacementForPrecheck, printActionOptions, printHelp, printHelp, printInfo, printPipeDir, printPipelineStatus, printVersion, restartDirHasStatusFlag, setPipedir, showArgs, watchProcess

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GUI_PORT

public static final int GUI_PORT

See Also:

Constant Field Values

EXTERNAL_MODULES_CONTAINER_DIR

public static final String EXTERNAL_MODULES_CONTAINER_DIR

See Also:

Constant Field Values

Constructor Detail

DockerLaunchProcess

public DockerLaunchProcess(String[] args)
                    throws EndLaunch,
                           DockerVolCreationException,
                           ConfigPathException

Throws:

EndLaunch

DockerVolCreationException

ConfigPathException

Method Detail

main

public static void main(String[] args)
                 throws InterruptedException

Throws:

InterruptedException

createCmd

String createCmd()
          throws Exception

Overrides:

createCmd in class LaunchProcess

Throws:

Exception

runCommand

void runCommand()
         throws Exception

Overrides:

runCommand in class LaunchProcess

Throws:

Exception

scanForKeys

void scanForKeys(String s)

Description copied from class: LaunchProcess

Scan string for specific keys which warrant specific actions.

Overrides:

scanForKeys in class LaunchProcess

grabPipelineLocation

void grabPipelineLocation(String s)

Overrides:

grabPipelineLocation in class LaunchProcess

grabContainerId

void grabContainerId(String s)