| Package | Description |
|---|---|
| biolockj.util |
Static utilities centralize and organize reusable core methods.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
BashScriptBuilder.buildScripts(ScriptModule module,
List<List<String>> data)
This method builds the bash scripts required for the given module.
Standard local/cluster pipelines include: 1 MAIN script, 1+ worker-scripts. Docker R_Modules include: 1 MAIN script, 0 worker-scripts - MAIN.R run by MAIN.sh Docker *non-R_Modules* include: 1 MAIN script, 1+ worker-scripts - MAIN.sh runs workers AWS Docker R_Modules include: 0 MAIN scripts, 0 worker-scripts - MAIN.R run by Nextflow AWS Docker *non-R_Modules* include: 0 MAIN scripts, 1+ worker-scripts MAIN.sh runs workers |