biolockj.exception

Class SequnceFormatException

java.lang.Object

java.lang.Throwable

java.lang.Exception

biolockj.exception.BioLockJException

biolockj.exception.SequnceFormatException

All Implemented Interfaces:

Serializable

public class SequnceFormatException
extends BioLockJException

SequnceFormatException is thrown if errors occur processing fasta/fastq sequence files.

See Also:

Serialized Form

Field Summary

Fields inherited from class biolockj.exception.BioLockJException

RETURN

Constructor Summary

Constructors

Constructor and Description
SequnceFormatException(File seqFile, String msg) Create standard error to throw for fasta/fastq sequence file parsing errors.
SequnceFormatException(String msg) Create standard error to throw for fasta/fastq sequence file parsing errors.

Method Summary

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SequnceFormatException

public SequnceFormatException(File seqFile,
                              String msg)

Create standard error to throw for fasta/fastq sequence file parsing errors.

Parameters:

seqFile - fasta/fastq sequence file (possibly compressed)

msg - Exception message details

SequnceFormatException

public SequnceFormatException(String msg)

Create standard error to throw for fasta/fastq sequence file parsing errors.

Parameters:

msg - Exception message details