biolockj.module.implicit.parser.wgs is a sub package of module.implicit.parser.
Package modules extend ParserModuleImpl to generate OTU tables from WGS classifier output.
Implicit modules are ignored if included in the Config file unless project.allowImplicitModules=Y.
Humann2Parser#
(added by BioLockJ) #BioModule biolockj.module.implicit.parser.wgs.Humann2Parser
Description: Build OTU tables from HumanN2 classifier module output.
Options:
none
KrakenParser#
(added by BioLockJ) #BioModule biolockj.module.implicit.parser.wgs.KrakenParser
Description: Build OTU tables from KRAKEN mpa-format reports.
Options:
none
Kraken2Parser#
(added by BioLockJ) #BioModule biolockj.module.implicit.parser.wgs.Kraken2Parser
Description: Build OTU tables from KRAKEN 2 mpa-format reports.
Options:
none
Metaphlan2Parser#
(added by BioLockJ) #BioModule biolockj.module.implicit.parser.wgs.MetaphlanParser
Description: Build OTU tables from Metaphlan2 classifier module reports.
Options:
none