biolockj.module.implicit.parser modules parse classifier output to generate OTU tables.
Implicit modules are ignored if included in the Config file unless project.allowImplicitModules=Y.

This package contains the following sub-packages:

  1. module.implicit.parser.r16s modules parse module.classifier.r16s reports.
  2. module.implicit.parser.wgs modules parse module.classifier.wgs reports.

ParserModuleImpl#

cannot be included in the pipeline run order

Description: Abstract implementation of ParserModule that the other modules extend to inherit standard functionality.
Abstract modules cannot be added to a pipeline, but the r16s & WGS sub-packages contain modules that inherit standard parser functionality from this class.

Options:

  • report.numHits